Whole-genome sequencing uncovers the extreme adaptation mechanisms of Pseudomonas sp. Ma2-10 screened from the Antarctic sea sediment near King George Island.
Deng Rui R, He Yuanfang Y, Zhang Xiying X, Wang Guofang G et al.
Pseudomonas sp. Ma2-10 was isolated from marine sediment near King George Island, South Shetland Islands, Antarctica. In this study, we determined the complete genome sequence of this strain. The results showed that the strain has a genome size of 5,811,804 bp with a GC content of 58.5 mol%, and the coding region accounted for 89.03% of the total genome length, containing 5095 protein-coding genes. Through annotation with the CAZy database, we identified 120 carbohydrate-active enzymes, indicating that Ma2-10 has an extremely strong ability to synthesize extracellular polysaccharides (EPS). Functional annotation of the strain's genome using KEGG and GO databases revealed that the strain's genes were significantly enriched in amino acid metabolism, carbohydrate metabolism, membrane transport, and signal transduction pathways, providing a molecular basis for its adaptation to the extreme environments of low temperature, high salt, and oligotrophy. Nine secondary metabolite biosynthetic gene clusters were identified through secondary metabolite synthesis analysis. These gene clusters indicate that the strain has the potential to produce various bioactive substances such as antibiotics and siderophores, which can be used for niche competition and stress resistance, and possesses a genetic basis for antioxidant activity and hyperosmotic tolerance. The results of this study can provide a reference for further understanding and exploitation of the beneficial functions of Pseudomonas sp. Ma2-10.